Progams and scripts
A few programs written in the past that have been useful.
RotaMol
Predicting protein size
Allows prediction of protein size based on PDB coordinates from NMR or X-ray crystallography.
Now also allows measurement of protein external electrostatics for a combined measure of size and external charge.
GC
Rapid manipulation of dna sequences
Rapid manipulation of DNA sequences:
Strip white space (returns, tabs etc)
Strip non-DNA letters
Reverse complement
Uppercase-lowercase all
Metagenetics scripts various
https://github.com/sebastianevda/SEvdA_metagen
Various scripts and instructions for dealing with some metagenetics data.
Also various python scripts to draw figures, 3D surface plots based on X, Y and Z vairables. Plotting points on maps, and plotting piecharts on maps etc.
DOWNLOAD
ColourCounter
https://github.com/sebastianevda/ColourCounter
GUI interface for quantifying colour differences.
Count pixel number if different from background within an area on screen as defined by mouse clicks